The National Centre for Biological Sciences (NCBS) and the International Centre for Theoretical Sciences (ICTS), both centres of the Tata Institute of Fundamental Research (TIFR), have signed an agreement to jointly establish a Centre for Artificial Learning and Intelligence for Biological Research and Education (CALIBRE).

CALIBRE will be an interdisciplinary centre dedicated to advancing the integration of Artificial Intelligence (AI) in biological research, education and innovation.

Harnessing AI to transform biology research

The objectives of the centre include establishing state-of-the-art infrastructure to harness the power of AI to transform biology research, developing advanced AI tools for basic, applied, and translational biology research, employing neuromorphic, brain-inspired computing approaches to advance AI technology, providing education and training to young Indian researchers to apply AI tools in biological research and creating named Chair Professorships and Research Travel Fellowships to support biology research.

“While several AI platforms exist internationally, India requires its own context-specific AI tools and infrastructure to address challenges unique to Indian biodiversity, climate, health landscape, and fundamental research landscape. CALIBRE will serve as the national hub where biological insight meets AI innovation,” said a communique from NCBS.

Convergence of frontiers

CALIBRE will be set up through a ₹25 crore contribution from Vishal Gupta, founder of Reed India Consulting LLP, and Ms. Deepshikha Gupta.

“Biology for AI and AI for Biology — two frontiers converging, powered by India’s brightest minds at CALIBRE”, said Mr. Gupta 

L.S. Shashidhara, Director, NCBS., noted that the work of NCBS researchers who work across scales of biology will help test and evaluate the power and limits of various AI tools.

Rajesh Gopakumar, Director, ICTS, noted that ICTS’ deep strengths in the mathematical and theoretical sciences will help in the development of new AI techniques and tools with applications in biology as well as related areas of epidemiology and public health.

“Finally, the most exciting frontier is to use insights from the functioning and architecture of the brain itself to improve the current AI frameworks,” he added.

The National Centre for Biological Sciences (NCBS), in a collaborative study, have found that two simple environmental factors — calcium and pH — dictate whether the cancer spheroids hold together, fall apart, or even rebuild themselves from scratch.

Floating cluster of cells

When ovarian cancer spreads, it often does so via floating clusters of cells – called spheroids – that drift through the abdominal cavity.

“These spheroids are quite sophisticated — some look like solid, misshapen masses (moruloids), while others resemble smooth, mulberry-like hollow structures (blastuloids). Why and how these structures emerge, and whether they affect how the cancer progresses has been under speculation for years,” NCBS said.

Dr. Tapomoy Bhattacharjee’s lab at the NCBS in collaboration with Dr. Ramray Bhat’s lab at the Indian Institute of Science (IISc.), conducted this interdisciplinary work published in the scientific journal Small.

Led by Sreepadmanabh M., a graduate student at the Bhattacharjee lab, the team first investigated hollow blastuloids, which periodically undergo dramatic volume fluctuations.

“Every few hours, their central cavity pulses, collapses dramatically, and then steadily recovers — somewhat like a slowed-down heartbeat. Remarkably, despite these catastrophic fluctuations, the overall blastuloid, comprising hundreds of tightly organised cells, eventually recovers its overall shape. The secret to this recovery lies in the E-cadherin junctions, the biological mortar that binds cells together, whose stability depends on calcium,” NCBS said.

By tweaking calcium levels, the researchers found they could flip the spheroids between completely different states.

A sudden removal of calcium caused blastuloids to collapse into solid, moruloid-like masses within minutes. But when calcium was restored, the hollow structure reappeared far quicker than it had formed in the first place. Even when spheroids were completely disassembled into single cells, they rapidly reassembled into complex hollow forms in just two days — a feat that normally takes more than a week. “Simply put, once the cells have formed a blastuloid, the next time around they remember how to rebuild it much faster,” said Sreepadmanabh.

Direct clinical connection

Going beyond this, the team found that another commonplace entity — pH, a measure of how acidic or alkaline the environment becomes — proves equally influential. This has a direct clinical connection because cancer spheroids are often found in acidic ascitic fluid inside the abdomen. The researchers found that when exposed to acidic pH (~6), blastuloids paused their pulsations, leaving their hollow cavity intact.

“Contrastingly, alkaline conditions (pH ~8.5) collapsed them into solid masses– which again was completely reversible upon restoring pH to normal levels,” NCBS said.