Drosophila melanogaster – Artifex.News https://artifex.news Stay Connected. Stay Informed. Mon, 11 Mar 2024 10:00:00 +0000 en-US hourly 1 https://wordpress.org/?v=6.6 https://artifex.news/wp-content/uploads/2023/08/cropped-Artifex-Round-32x32.png Drosophila melanogaster – Artifex.News https://artifex.news 32 32 Why it matters that scientists modified a ‘sexual’ fruit fly to be asexual https://artifex.news/article67938538-ece/ Mon, 11 Mar 2024 10:00:00 +0000 https://artifex.news/article67938538-ece/ Read More “Why it matters that scientists modified a ‘sexual’ fruit fly to be asexual” »

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The fruit-fly (Drosophila melanogaster) has been among the favourite organisms of genetics researchers for more than a hundred years. Many years of intense research with these diminutive creatures have led to many breakthroughs in our understanding of biology and evolution.

Recently, researchers from Cambridge University and the California Institute of Technology reported yet another such breakthrough. They were able to ‘engineer’ a sexually reproducing fruit-fly species to reproduce asexually, demonstrating the profound biological consequences of relatively minor genetic manipulation.

The first study that reported this significant feat was published in July 2023; a follow-up study to it was published in the February 2024 issue of Heredity.

The Drosophila family

How was an organism that usually reproduces sexually turned into one that could reproduce asexually?

Fatherless reproduction is known as parthenogenesis.

Earlier, other researchers had collected fruit-fly-like specimens from diverse geographies and compared them in different ways with the canonical specimen and with each other, to gauge the extent of their natural diversity. The collection represented more than 1,600 Drosophila species.

Of these, one species, Drosophila mangebeirai, was found to consist only of females. The eggs produced by isolated females developed directly into female progeny without having to be fertilised by sperm from a male.

Many species (about 76%) that ordinarily reproduce sexually were found to also hatch a small fraction of eggs laid by isolated virgin females into larvae, a smaller fraction of which went on to develop into adults. The name for such species – i.e. which are arbitrarily parthenogenetic a small fraction of the time – is facultatively parthenogenetic. One of them was Drosophila mercatorum.

The canonical species used in research, Drosophila melanogaster, is however strictly sexual.

The genes for parthenogenesis

The researchers set themselves two goals. First, to identify the genes that allow unfertilised Drosophila mercatorum eggsto complete parthenogenetic development. Second, to modify the Drosophila melanogaster genome to express the corresponding genes in a way that would trigger parthenogenesis.

RNA sequencing is a technique that can quantitatively estimate the level to which a gene is expressed. Using this technique, the researchers identified 44 genes in D. mercatorum eggs that were expressed differently when they were parthenogenetic versus when they weren’t.

The DNA is a ladder-like molecule. Its two rails, or strands, are made of a long series of alternating units of phosphate molecules and the sugar deoxyribose molecules. Each sugar unit is attached to one of the four chemical bases: adenine (A), cytosine (C), guanine (G), and thymine (T). The As and Cs on one strand link with the Ts and Gs on the other to form the rungs, or base-pairs, that hold the strands together.

The Drosophila melanogaster genome has 200,000,000 base-pairs distributed across four DNA molecules. Each molecule is the core of a chromosome. The four chromosomes together make up the genome. In all, this genome encodes about 13,600 genes.

On the other hand, the RNA molecule is comb-like. Its spine (strand) is made of alternating units of phosphate and sugar ribose molecules. Each sugar unit is attached to one of the four bases: A, C, G, and uridine (U), which make up the comb’s tines.

A gene is a segment of a few thousand base-pairs of the DNA molecule. The sequence of bases on one of its strands tells every cell the sequence of amino acids it needs to string together to make a protein. To do this, the cell copies the sequence of As, Ts, Cs, and Gs in the DNA’s protein-coding strand to a sequence of Us, As, Gs, and Cs, respectively, to form the RNA. The RNA is then sent to structures called ribosomes, which assemble the encoded protein.

Engineering asexual reproduction

The 44 genes whose expression differed between eggs of parthenogenetic and sexually-reproducing D. mercatorum strains had counterparts in the D. melanogaster genome. The researchers over- or under-expressed the counterparts to the levels in the D. mercatorum parthenogenetic eggs.

In particular, they found that if the genome of a D. melanogaster specimen was modified to have two extra copies of the polo gene, an extra copy of the Myc gene, and a lower expression of the Desat2 gene, 1.4% of the specimen’s eggs were parthenogenetic and whose offspring survived to adulthood.

The researchers also found that these parthenogenetically produced adult flies could also mate with male flies and produce progeny. So a strictly sexually reproducing fly was made facultatively parthenogenetic.

The polar bodies

A fly receives two sets of chromosomes, one from each parent. It transmits only one chromosome of each pair to its egg or sperm. Say a sperm has fertilised an egg. This egg will now have five sets of the genome: one in the egg’s nucleus (maternal pronucleus), another in the nucleus from the sperm (paternal pronucleus), and three more nuclei called polar bodies that are sequestered in the egg’s periphery.

The polar bodies are a by-product of the mechanism by which the fly transmits only one chromosome of each pair to the egg nucleus. Normally, the male and female pronuclei fuse to form the progeny nucleus, and the polar bodies are lost. If an egg is unfertilised, however, it lacks the male pronucleus and the female pronucleus is unable to initiate embryonic development on its own.

Altering the protein levels of polo, Myc and Desat2 likely rendered polar-body sequestration and disposal inefficient. This makes one or more polar bodies available to substitute for the missing male pronucleus and start embryonic development. 

These findings have implications to approaches to control insect pests by releasing large numbers of males sterilised by irradiation or males bearing genomes edited to derail progeny development, and thus reduce progeny numbers. Unwittingly, this approach will also select for facultatively parthenogenetic individuals, thus limiting its long-term effectiveness.

The author is a retired scientist.



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The scientists in Japan who scared flies to understand fear https://artifex.news/article67250739-ece/ Wed, 30 Aug 2023 03:47:57 +0000 https://artifex.news/article67250739-ece/ Read More “The scientists in Japan who scared flies to understand fear” »

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Masato Tsuji has been observing insects since he was a child. He loves studying flies, so much so that he shows them horror movies and scares them – all to understand what happens in their brain when they’re afraid.

“Our discovery may provide a clue to treat psychiatric diseases stemming from exaggerated fear, such as phobia and anxiety disorders,” Dr. Tsuji, an assistant professor at the University of Tokyo, told this writer.

Do flies feel fear like we do?

It’s easy to question our understanding of a fly’s feelings. After all, the fly’s brain and evolutionary history differ from ours. Fear is also a humanised emotional state. So we can’t say for sure whether flies have feelings.

However, previous research has shown that flies exhibit defensive responses that resemble fear-like emotional states. The response leads to changes in the internal brain state. So flies offer an opportunity to study the neural and molecular basis of a fear-like state.

A horror movie for flies

To understand fear, researchers Dr. Tsuji, Yuto Nishizuka, and Kazuo Emoto built a virtual reality arena – a mini theatre for flies – fit with lights, cameras, screens, and a scary action scene.

The virtual reality arena to study fly behaviour.
| Photo Credit:
Masato Tsuji

What scares flies? A puff of air and a small black dot the size of a spider, their natural predator, moving around.

But first, the researchers had to get tiny fruit flies (Drosophila melanogaster) one by one into the mini theatre. It was a delicate task. First, Dr. Tsuji tethered a sedated fly to a small rod with a dribble of glue on its back. Once it woke up, it would find itself on a small Styrofoam ball suspended over a thin layer of air created using an air compressor. The fly could rest or walk around on the ball.

After the fly became acquainted with the setup, the movie began on an LED screen in front. While the dot moved on the screen, a small nozzle over the fly blew puffs of air.

Flies avert their gaze

As the dot moved after an air puff, the flies started to walk on the ball, turning away from the dot. All flies responded to the dot only when paired with an air puff as well.

Some flies froze or jumped, but most turned and ran away from the threat.

According to Dr. Tsuji and his team’s paper, published in the journal Nature Communications in July, a cluster of 20-30 neurons in the visual regions of the fly’s brain is responsible for this behaviour.

The fear neurochemical

Dr. Tsuji’s team took advantage of the variety of tools to genetically modify and study fruit flies to isolate a set of mutant flies. By manipulating and recording the activity of their neurons, they found that a neurochemical called tachykinin activated the flies’ aversion behaviour.

That is, flies that had a mutation that deprived them of neurons that could release tachykinin didn’t display the threat avoidance behaviour, even if they retained other visual and motor responses.

“This molecule causes anxiety-like symptoms in mice and humans,” Dr. Tsuji said. “At the level of molecules or genes, perhaps the fear-like mechanism is preserved across animal species.”

That could explain why we may look away from scary scenes in films or animals like snakes.

A neurochemical wave of fear?

Dr. Tsuji focused further on the finer details of the activity of tachykinin-releasing neurons. 

Normally, an influx of calcium ions coincides with the electrical activity of neurons. More calcium in the neurons indicates an active neuron; less calcium shows an inactive neuron.

So a microscopy technique called calcium imaging helped Dr. Tsuji’s team visualise how neural activity in fearful flies changes with time. 

To their surprise, they found that the activity of the tachykinin-releasing neurons increased and decreased rapidly, as the amount of calcium in their neurons went up and down like a wave.

Such oscillating neural activity is rare for Drosophila melanogaster, though the evidence has been accumulating as the technology has developed to record such small and fast neural activity fluctuations.

When the team artificially generated the wave-like calcium activity patterns in their neurons, flies turned away from the stimulus. “That wave signal, we believe, is functioning as a fear-like command that drives the escape behaviour,” Dr. Tsuji said.

An application

Neural activity oscillation occurs in the fly brain only during a fear-like emotional state. However, Dr. Tsuji speculated that in the brains of the people with phobias and anxiety, the wave-like neural activity pattern could occur even in response to a neutral stimulus.

Masato Tsuji, an assistant professor at the University of Tokyo.

Masato Tsuji, an assistant professor at the University of Tokyo.
| Photo Credit:
Special arrangement

He expressed hope that their work would cast light on why phobic patients overreact to usually non-frightening stimuli. “If I can be speculative, one possibility is that humans have similar neural circuitry that drives the escape behaviour in the brain.”

“If this possibility is true, perhaps we can intervene with such activity patterns in a targeted way to help alleviate the fearful symptoms,” Dr. Tsuji added.

Mapping the fear circuit

The neurons regulating the aversion behaviour are in the visual region of the fly’s brain, so the team wants to understand how they regulate vision. That is, how is visual information transmitted to elicit the fear response?

They are now working to reveal further details of fear and its effects on vision in flies. “We want to build a complete circuit diagram of how fear regulates vision,” Dr. Tsuji said.

His curiosity as a child observing insects in his garden might one day help discover the intricate workings of their little brains sensing fear, and potentially benefit many patients suffering from phobic disorders.

Ravindra Palavalli Nettimi is a project specialist at the Office of Research Strategy and Development at the University of Tokyo.



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